SFA-215: Biochemistry

1. Course Identification
Course Biochemistry
Faculty Mathematics and Natural Sciences Study Program Pharmacy
Code SFA-215 Credits 3 credits
Group Study Program Status Compulsory
Semester II (Second) Availability Limited in Study Program
Learning Method Class Media Web-enhanced Learning
Cluster Biomedical and Pharmaceutical Sciences: Pharmaceutical Chemistry Prerequisite Organic Chemistry
2. Course Description

Biochemistry courses in the Curriculum in Pharmacy Study Program are given to second-semester students with a weight of 3 credits. This subject is a compulsory subject that is taken with Organic Chemistry as prerequisites. This course aims to support the Learning Outcomes in the form of mastery of basic biomedical sciences, integrative thinking skills, and cooperative skills. In this course, students will study the chemical processes of living cells, especially in humans. In this lecture, basic biochemical knowledge will be given, including the concepts of metabolism and metabolic parameters, generation of ATP, carbohydrate metabolism, lipid metabolism, protein metabolism, integration metabolism in the fed and fasting condition, mineral metabolism, nucleotide metabolism, and ethanol metabolism. Also, the application of knowledge about Biochemistry in solving relevant clinical cases will be studied in this course. This activity will train students’ abilities in critical thinking, working together, expressing opinions, and presenting.

1. Learning Outcome
LO Code LO
PEF2 Able to comprehend the fundamental theories, methods, concepts and application of biomedical sciences supporting the development of pharmaceutical sciences and services.
PEF6 Able to comprehend the basic principles of integrating Islamic values within pharmaceutical sciences and practices.
KUF6 Able to analyze collaboration and partnership opportunities for self- and career development as well as be able to positively contribute in any teamwork.
2. Course Learning Outcome and indicators
Supported LO Code CLO Code CLO and indicators
PEF2 CLO1 Explain metabolism parameters, generation of ATP, and carbohydrate metabolism in human

1.     Students can explain systematically metabolism parameters, generation of ATP, and carbohydrate metabolism in human

CLO2 Explain lipid metabolism, protein metabolism, nucleotide metabolism, and macro mineral metabolism in healthy humans and the role of transition metals in biochemistry

1.     Students can explain correctly lipid metabolism, protein metabolism, nucleotide metabolism, and macromineral metabolism in healthy humans and the role of transition metals in biochemistry

CLO3 Integrate between carbohydrate, lipid and protein metabolism in the fed and fasting condition

1.     Students can integrate comprehensively between carbohydrate, lipid and protein metabolism in the fed and fasting condition

CLO4 Apply basic knowledge of biochemistry in conditions of obesity, diabetes mellitus, dyslipidemia, hyperuricemia, and malnutrition

1.     Students can apply correctly and appropriately basic knowledge of biochemistry in various clinical conditions, including obesity, diabetes mellitus, dyslipidemia, hyperuricemia, and malnutrition

PEF6 CLO5 Apply clinical and Islamic concepts related to ethanol metabolism

1.     Students can correctly apply clinical and Islamic concepts related to ethanol metabolism

KUF6 CLO6 Contribute in teamwork to solve biochemical cases in various clinical conditions

1.     Students can contribute actively in teamwork to solve biochemical cases in various clinical conditions

3. Course Learning Outcome Map Analysis

Primary References

  1. Rodwell V. W., Bender D. A., Botham K. M., Kennelly P. J., Weil P. A., 2018, Harper’s Biochemistry 31st Edition, McGraw-Hill Companies, New York
  2. Lieberman M and Peet A, 2018, Marks’ Basic Medical Biochemistry: A Clinical Approach 5th Edition, Wolters Kluwer, Philadelphia
  3. Ferrier D. R., 2014, Lippincott’s Illustrated Reviews: Biochemistry 6th Ed., Lippincott Williams and Wilkins

Other
Most of the cases are downloaded from National Center for Case Study Teaching in Science (https://sciencecases.lib.buffalo.edu/)

1. Learning activities
Sesion CLO Topic Learning activities
1 CLO1 Learning contracts

Introduction of Biochemistry for Pharmacist

Basic of Metabolism

Class:

Lecturer consents the learning contracts with the students. Class will be performed using Mentimeter, Google Form and case study to study the topics

Topics:

·       Learning contracts (20 min): Framework of course, Learning Outcome, Topics-Sub Topics, References, Learning Strategies, and Grading System.

·       Introduction of Biochemistry for Pharmacist (60 min): Mentimeter & Case Study

·       Basic of Metabolism (60 min): Google Form & discussion

Online 

·       Google Form to identify student’s background and basic metabolism

·       Mentimeter to identify student’s prior knowledge about biochemistry for pharmacist and their expectation

·       Flipped classroom: Enzyme part 1

Saturday

29/02/2020,

09.40-12.10

2 CLO1 Enzyme Class

Enzyme:

·       Structure, classification & nomenclature

·       Enzyme specificity

·       Role of cofactor in enzymatic reaction

·       Enzyme kinetics part 1

Online:

Mini quiz about enzyme part 1

Flipped classroom: Enzyme part 2

Saturday

07/03/2020,

09.40-12.10

3 CLO1 Enzyme kinetics Class

Enzyme:

Enzyme kinetics part 2

Enzyme in clinical & pharmacy practice

Online

Mini quiz about enzyme part 2

Flipped classroom: Generation of ATP (Oxidative phosphorylation and aerobic glycolisis)

Saturday

14/03/2020,

09.40-12.10

4 CLO1 Generation of ATP Class

Generation of ATP:

·       Oxidative phosphorylation

·       Generation of ATP from carbohydrate: Aerobic Glycolisis

Online

Mini quiz about ATP part 1

Saturday

21/03/2020,

09.40-12.10

5 CLO1 Anaerobic glycolysis and glycolisis in erithrocyte Online Class

Topics: Anaerobic glycolysis and glycolisis in erithrocyte

Online quiz with Google Form

Flipped classroom: Generation of ATP (Pyruvic decarboxylation and Creb’s cycle)

Saturday

28/03/2020,

09.40-12.10

6 CLO1 Generation of ATP from carbohydrate: oxidation of pyruvate and Creb’s cycle

Carbohydrate metabolism

Class

Generation of ATP from carbohydrate: oxidation of pyruvate and Creb’s cycle

Carbohydrate metabolism: glycogen metabolism & phosphate pentose pathway

Online

Mini quiz about ATP 2

Saturday

04/04/2020,

09.40-12.10

7 CLO5 Ethanol metabolism Online Class

Group and Individual Assignment: Ethanol metabolism from Islam and clinical perspective

·       Groups upload the assignment in Google Classroom (max 5 minutes)

·       Each students (individual assignment) do peer-review for each group. Fill Google Form of each group (80 minutes) for suggestions, questions, and assessments. Responses of Google Form will be accessible for all students.

·       Group members answer or respon to any suggestions and questions from other students (60 minutes) by filling Google Form

Saturday

11/04/2020,

09.40-12.10

8 CLO1

CLO5

Mid-term examination
9 CLO2 Generation of ATP from lipid Class

Generation of ATP from lipid:

structure and characteristics of fatty acid oxidation

beta-oxydation of fatty acid

Online

Mini quiz about ATP 3

Flipped classroom: Lipid metabolism (synthesis of fatty acids)

Saturday

02/05/2020,

09.40-12.10

10 CLO2 Lipid metabolism Class

Lipid metabolism: synthesis of fatty acids and lipoproteins

Online

Mini quiz about Lipid metabolism

Flipped classroom: Protein metabolism (urea cycle, synthesis and degradation of amino acids)

Saturday

09/05/2020,

09.40-12.10

11 CLO2 Protein metabolism Class

Protein metabolism: basic concept of protein metabolism, urea cycle, synthesis and degradation of amino acids

Online

Mini quiz about protein metabolism

Flipped classroom: Gluconeogenesis and blood glucose control

Saturday

06/06/2020,

09.40-12.10

12 CLO2

CLO3

Gluconeogenesis and blood glucose control Class

Gluconeogenesis and blood glucose control

Integration Metabolism in the fed and fasting condition

Online

Mini quiz about gluconeogenesis and blood glucose control

Saturday

13/06/2020,

09.40-12.10

13 CLO2

CLO6

Mineral Metabolism Online Class

Group and Individual Assignment: Mineral Metabolism

·       Groups upload the assignment in Google Classroom (max 5 minutes)

·       Each students (individual assignment) do peer-review for each group. Fill Google Form of each group (80 minutes) for suggestions, questions, and assessments. Responses of Google Form will be accessible for all students.

·       Group members answer or respon to any suggestions and questions from other students (60 minutes) by filling Google Form

Flipped classroom: Nucleotide metabolism

Saturday

20/06/2020,

09.40-12.10

14 CLO2

CLO6

Nucleotide metabolism and its clinical disorders Class

Nucleotide metabolism and its clinical disorders

Online

Group assignment about application of biochemistry in clinical condition

Saturday

27/06/2020,

09.40-12.10

15 CLO4

CLO6

Biochemistry in clinical condition Class

Biochemistry in clinical condition: Obesity, Malnutrition, Diabetes Mellitus, Dyslipidemia and Hyperuricemia

Case study Presentation

Online

Exam preparation tests

Saturday

04/07/2020,

09.40-12.10

16 CLO2

CLO3

CLO4

Final examination
2. Learning Experience

The learning process use flipped classroom method. Meanwhile, topics in biochemistry will be learned based on case studies, quizzes and assignments that are held online and offline

1. Assessment
CLO Code Assessment Weight
CLO1 Assignment

Quiz

Examination

25%
CLO2 Assignment

Quiz

Examination

25%
CLO3 Assignment

Quiz

Examination

10%
CLO4 Assignment

Quiz

Examination

15%
CLO5 Assignment

Quiz

Examination

15%
CLO6 Assignment 10%
2. Grading and Evaluation Systems

Grading system uses reference assessment as follows:

Letter Value Weight Minimum Value Value Range
A 4 80 80.00 – 100
A- 3.75 77.5 77.50 – 79.99
A/B 3.5 75 75.00 – 77.49
B+ 3.25 72.5 72.50 – 74.99
B 3 70 70.00 – 72.49
B- 2.75 67.5 67.50 – 69.99
B/C 2.5 65 65.00 – 67.49
C+ 2.25 62.5 62.50 – 64.99
C 2 60 60.00 – 62.49
C- 1.75 55 55.00 – 59.99
C/D 1.5 50 50.00 – 54.99
D+ 1.25 45 45.00 – 49.99
D 1 40 40.00 – 44.99
E 0 0 < 40

Evaluation Systems

Students must achieve a grade of at least 40 for each course learning outcome. If it does not meet the requirements, they must carry out the test/remedial for the relevant course learning outcome.